HL_5IT9_037

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUAAAUACAAUUUUGAGAGGUUAAUAAAUUAC

Length

32 nucleotides

Bulged bases

5IT9|1|i|U|6061, 5IT9|1|i|U|6068

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_62809.1

Basepair signature

cWW-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R-R

Number of instances in this motif group

1

Unit IDs

5IT9|1|i|G|6048
5IT9|1|i|U|6049
5IT9|1|i|A|6050
5IT9|1|i|A|6051
5IT9|1|i|A|6052
5IT9|1|i|U|6053
5IT9|1|i|A|6054
5IT9|1|i|C|6055
5IT9|1|i|A|6056
5IT9|1|i|A|6057
5IT9|1|i|U|6058
5IT9|1|i|U|6059
5IT9|1|i|U|6060
5IT9|1|i|U|6061
5IT9|1|i|G|6062
5IT9|1|i|A|6063
5IT9|1|i|G|6064
5IT9|1|i|A|6065
5IT9|1|i|G|6066
5IT9|1|i|G|6067
5IT9|1|i|U|6068
5IT9|1|i|U|6069
5IT9|1|i|A|6070
5IT9|1|i|A|6071
5IT9|1|i|U|6072
5IT9|1|i|A|6073
5IT9|1|i|A|6074
5IT9|1|i|A|6075
5IT9|1|i|U|6076
5IT9|1|i|U|6077
5IT9|1|i|A|6078
5IT9|1|i|C|6079

Current chains

Chain i

Cricket paralysis virus IRES RNA

Nearby chains