HL_5IT9_040

3D structure

PDB id

5IT9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAGAUUAGGUAGUCG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48953.1

Basepair signature

cWW-R-R-R-R-R-R-R-R-R-R-R-R

Number of instances in this motif group

4

Unit IDs

5IT9|1|i|C|6181
5IT9|1|i|A|6182
5IT9|1|i|G|6183
5IT9|1|i|A|6184
5IT9|1|i|U|6185
5IT9|1|i|U|6186
5IT9|1|i|A|6187
5IT9|1|i|G|6188
5IT9|1|i|G|6189
5IT9|1|i|U|6190
5IT9|1|i|A|6191
5IT9|1|i|G|6192
5IT9|1|i|U|6193
5IT9|1|i|C|6194
5IT9|1|i|G|6195

Current chains

Chain i

Cricket paralysis virus IRES RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain X

Ribosomal protein uS21

Chain f

Ribosomal protein eS31