HL_5J30_045

3D structure

PDB id

5J30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUGGGAAG

Length

8 nucleotides

Bulged bases

5J30|1|RA|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J30_045 not in the Motif Atlas

Homologous match to HL_7RQB_010

Geometric discrepancy: 0.049

The information below is about HL_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

5J30|1|RA|U|305
5J30|1|RA|U|306
5J30|1|RA|G|307
5J30|1|RA|G|308
5J30|1|RA|G|309
5J30|1|RA|A|310
5J30|1|RA|A|311
5J30|1|RA|G|312

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RY

50S ribosomal protein L24