HL_5J30_068

3D structure

PDB id

5J30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

5J30|1|RA|G|1325, 5J30|1|RA|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J30_068 not in the Motif Atlas

Geometric match to HL_7RQB_034

Geometric discrepancy: 0.0487

The information below is about HL_7RQB_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

5J30|1|RA|G|1324
5J30|1|RA|G|1325
5J30|1|RA|U|1326
5J30|1|RA|C|1327
5J30|1|RA|G|1328
5J30|1|RA|U|1329
5J30|1|RA|C|1330

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RR

50S ribosomal protein L17

Chain RW

50S ribosomal protein L22