HL_5J30_098

3D structure

PDB id

5J30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

C(2MU)GUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 2MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J30_098 not in the Motif Atlas

Homologous match to HL_5J7L_195

Geometric discrepancy: 0.0971

The information below is about HL_5J7L_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5J30|1|RA|C|2551
5J30|1|RA|2MU|2552
5J30|1|RA|G|2553
5J30|1|RA|U|2554
5J30|1|RA|U|2555
5J30|1|RA|C|2556
5J30|1|RA|G|2557

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QY

Peptide chain release factor 1