HL_5J30_120

3D structure

PDB id

5J30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCAGCC(7MG)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J30_120 not in the Motif Atlas

Geometric match to HL_2ZZN_004

Geometric discrepancy: 0.1527

The information below is about HL_2ZZN_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_09452.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

5J30|1|XA|G|521
5J30|1|XA|C|522
5J30|1|XA|A|523
5J30|1|XA|G|524
5J30|1|XA|C|525
5J30|1|XA|C|526
5J30|1|XA|7MG|527
5J30|1|XA|C|528

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

30S ribosomal protein S12