HL_5J3C_089

3D structure

PDB id

5J3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.04 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

5J3C|1|RA|A|2268, 5J3C|1|RA|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J3C_089 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0555

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

5J3C|1|RA|C|2264
5J3C|1|RA|U|2265
5J3C|1|RA|A|2266
5J3C|1|RA|A|2267
5J3C|1|RA|A|2268
5J3C|1|RA|A|2269
5J3C|1|RA|G|2270
5J3C|1|RA|G|2271
5J3C|1|RA|U|2272
5J3C|1|RA|A|2273
5J3C|1|RA|A|2274
5J3C|1|RA|C|2275
5J3C|1|RA|G|2276

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R0

50S ribosomal protein L27

Chain RQ

50S ribosomal protein L16

Chain RZ

50S ribosomal protein L25