HL_5J3C_130

3D structure

PDB id

5J3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.04 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

5J3C|1|XA|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J3C_130 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1005

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5J3C|1|XA|G|1089
5J3C|1|XA|U|1090
5J3C|1|XA|U|1091
5J3C|1|XA|A|1092
5J3C|1|XA|A|1093
5J3C|1|XA|G|1094
5J3C|1|XA|U|1095
5J3C|1|XA|C|1096

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XB

30S ribosomal protein S2

Chain XG

30S ribosomal protein S7