HL_5J3C_165

3D structure

PDB id

5J3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.04 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

5J3C|1|YA|U|827, 5J3C|1|YA|G|830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J3C_165 not in the Motif Atlas

Homologous match to HL_4WF9_025

Geometric discrepancy: 0.0612

The information below is about HL_4WF9_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55195.3

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

5J3C|1|YA|U|826
5J3C|1|YA|U|827
5J3C|1|YA|U|828
5J3C|1|YA|A|829
5J3C|1|YA|G|830
5J3C|1|YA|G|831

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YP

50S ribosomal protein L15