Motif HL_27530.1 Version HL_27530.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 1-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_9DFE_023 | 9DFE | 0.0840 | 2 | 1A | LSU rRNA | U | 826 | U | 828 | A | 829 | G | 831 | cWW | |
| 2 | HL_4WF9_025 | 4WF9 | 0.0663 | 2 | X | LSU rRNA | U | 871 | U | 873 | A | 874 | G | 876 | cWW | |
| 3 | HL_8B0X_055 | 8B0X | 0.0000 | 2 | a | LSU rRNA | U | 828 | U | 830 | A | 831 | G | 833 | cWW | |
| 4 | HL_7A0S_024 | 7A0S | 0.1773 | 2 | X | LSU rRNA | U | 839 | G | 841 | A | 842 | G | 844 | cWW | |
| 5 | HL_4V9F_026 | 4V9F | 0.1944 | 2 | 0 | LSU rRNA | U | 919 | G | 921 | A | 922 | G | 924 | cWW | |
| 6 | HL_8OI5_021 | 8OI5 | 0.4629 | 2 | Externally structured (H) | 1 | LSU rRNA | C | 954 | U | 956 | C | 957 | G | 959 | cWW |
| 7 | HL_8P9A_134 | 8P9A | 0.4250 | 2 | Externally structured (H) | AR | LSU rRNA | C | 958 | U | 960 | C | 961 | G | 963 | cWW |
| 8 | HL_9E6Q_026 | 9E6Q | 0.3072 | 2 | 1 | LSU rRNA | U | 944 | U | 946 | C | 947 | G | 949 | cWW | |
| 9 | HL_9AXU_020 | 9AXU | 0.5716 | 2 | 2 | LSU rRNA | C | 990 | U | 992 | C | 993 | G | 995 | cWW | |
| 10 | HL_8GLP_025 | 8GLP | 0.7267 | 2 | Externally structured (H) | L5 | LSU rRNA | C | 1675 | PSU | 1677 | C | 1678 | G | 1680 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUAGG | 3 |
| CCUCAG | 3 |
| UUGAGG | 1 |
| UCGAAG | 1 |
| UCUCAG | 1 |
| CCCAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUCA | 4 |
| UUAG | 3 |
| UGAG | 1 |
| CGAA | 1 |
| C(PSU)CA | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Externally structured (H) (3)
- Basepair signature
- cWW-F-F
- Heat map statistics
- Min 0.07 | Avg 0.39 | Max 0.88
Coloring options: