HL_5J3C_173

3D structure

PDB id

5J3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.04 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

5J3C|1|YA|G|1325, 5J3C|1|YA|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J3C_173 not in the Motif Atlas

Homologous match to HL_7RQB_034

Geometric discrepancy: 0.0484

The information below is about HL_7RQB_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

5J3C|1|YA|G|1324
5J3C|1|YA|G|1325
5J3C|1|YA|U|1326
5J3C|1|YA|C|1327
5J3C|1|YA|G|1328
5J3C|1|YA|U|1329
5J3C|1|YA|C|1330

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YR

50S ribosomal protein L17

Chain YW

50S ribosomal protein L22