HL_5J3C_183

3D structure

PDB id

5J3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.04 Å

Loop

Sequence

UGAUGAG

Length

7 nucleotides

Bulged bases

5J3C|1|YA|U|1739

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J3C_183 not in the Motif Atlas

Homologous match to HL_7RQB_043

Geometric discrepancy: 0.1033

The information below is about HL_7RQB_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43656.2

Basepair signature

cWW-tSH

Number of instances in this motif group

8

Unit IDs

5J3C|1|YA|U|1720
5J3C|1|YA|G|1721
5J3C|1|YA|A|1722
5J3C|1|YA|U|1739
5J3C|1|YA|G|1740
5J3C|1|YA|A|1741
5J3C|1|YA|G|1742

Current chains

Chain YA

23S rRNA

Nearby chains