3D structure

PDB id
5J4B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
GGAUGAC
Length
7 nucleotides
Bulged bases
5J4B|1|1A|U|1220, 5J4B|1|1A|G|1221
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5J4B_030 not in the Motif Atlas
Homologous match to HL_7RQB_031
Geometric discrepancy: 0.273
The information below is about HL_7RQB_031
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_94651.3
Basepair signature
cWW-tSS
Number of instances in this motif group
6

Unit IDs

5J4B|1|1A|G|1217
5J4B|1|1A|G|1218
5J4B|1|1A|A|1219
5J4B|1|1A|U|1220
5J4B|1|1A|G|1221
5J4B|1|1A|A|1222
5J4B|1|1A|C|1223

Current chains

Chain 1A
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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