HL_5J4B_053
3D structure
- PDB id
- 5J4B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CUAAAAGGUAACG
- Length
- 13 nucleotides
- Bulged bases
- 5J4B|1|1A|A|2280, 5J4B|1|1A|C|2287
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J4B_053 not in the Motif Atlas
- Homologous match to HL_7RQB_054
- Geometric discrepancy: 0.0389
- The information below is about HL_7RQB_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19870.6
- Basepair signature
- cWW-tSH-tHH-tWW-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
5J4B|1|1A|C|2276
5J4B|1|1A|U|2277
5J4B|1|1A|A|2278
5J4B|1|1A|A|2279
5J4B|1|1A|A|2280
5J4B|1|1A|A|2281
5J4B|1|1A|G|2282
5J4B|1|1A|G|2283
5J4B|1|1A|U|2284
5J4B|1|1A|A|2285
5J4B|1|1A|A|2286
5J4B|1|1A|C|2287
5J4B|1|1A|G|2288
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 10
- 50S ribosomal protein L27
- Chain 1B
- 5S ribosomal RNA; 5S rRNA
- Chain 1Q
- 50S ribosomal protein L16
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