HL_5J4B_075

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GCUUUGC

Length

7 nucleotides

Bulged bases

5J4B|1|1a|U|202, 5J4B|1|1a|U|204

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4B_075 not in the Motif Atlas

Homologous match to HL_6CZR_076

Geometric discrepancy: 0.2674

The information below is about HL_6CZR_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34168.3

Basepair signature

cWW-cWW-F

Number of instances in this motif group

11

Unit IDs

5J4B|1|1a|G|200
5J4B|1|1a|C|201
5J4B|1|1a|U|202
5J4B|1|1a|U|203
5J4B|1|1a|U|204
5J4B|1|1a|G|216
5J4B|1|1a|C|217

Current chains

Chain 1a

16S ribosomal RNA

Nearby chains