HL_5J4B_076
3D structure
- PDB id
- 5J4B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GGUAAUGGC
- Length
- 9 nucleotides
- Bulged bases
- 5J4B|1|1a|G|266
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J4B_076 not in the Motif Atlas
- Homologous match to HL_4LFB_006
- Geometric discrepancy: 0.0867
- The information below is about HL_4LFB_006
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_84299.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
5J4B|1|1a|G|259
5J4B|1|1a|G|260
5J4B|1|1a|U|261
5J4B|1|1a|A|262
5J4B|1|1a|A|263
5J4B|1|1a|U|264
5J4B|1|1a|G|265
5J4B|1|1a|G|266
5J4B|1|1a|C|267
Current chains
- Chain 1a
- 16S ribosomal RNA
Nearby chains
- Chain 1q
- 30S ribosomal protein S17
- Chain 1t
- 30S ribosomal protein S20
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