HL_5J4B_134
3D structure
- PDB id
- 5J4B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GGUGAGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J4B_134 not in the Motif Atlas
- Homologous match to HL_7RQB_022
- Geometric discrepancy: 0.0856
- The information below is about HL_7RQB_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84085.2
- Basepair signature
- cWW-tSH-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
5J4B|1|2A|G|712
5J4B|1|2A|G|713
5J4B|1|2A|U|714
5J4B|1|2A|G|715
5J4B|1|2A|A|716
5J4B|1|2A|G|717
5J4B|1|2A|A|718
5J4B|1|2A|C|719
Current chains
- Chain 2A
- 23S ribosomal RNA
Nearby chains
- Chain 2D
- 50S ribosomal protein L2
- Chain 2a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 2o
- 30S ribosomal protein S15
- Chain 2q
- 30S ribosomal protein S17
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