HL_5J4B_139

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAUAACG

Length

8 nucleotides

Bulged bases

5J4B|1|2A|U|958, 5J4B|1|2A|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4B_139 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.1039

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

5J4B|1|2A|C|955
5J4B|1|2A|G|956
5J4B|1|2A|A|957
5J4B|1|2A|U|958
5J4B|1|2A|A|959
5J4B|1|2A|A|960
5J4B|1|2A|C|961
5J4B|1|2A|G|962

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2Q

50S ribosomal protein L16