HL_5J4B_161

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

5J4B|1|2A|A|2030, 5J4B|1|2A|A|2031, 5J4B|1|2A|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4B_161 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.0546

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

5J4B|1|2A|G|2027
5J4B|1|2A|U|2028
5J4B|1|2A|G|2029
5J4B|1|2A|A|2030
5J4B|1|2A|A|2031
5J4B|1|2A|G|2032
5J4B|1|2A|A|2033
5J4B|1|2A|U|2034
5J4B|1|2A|G|2035
5J4B|1|2A|C|2036

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2V

50S ribosomal protein L21