HL_5J4B_173

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

C(2MU)GUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 2MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4B_173 not in the Motif Atlas

Homologous match to HL_7RQB_062

Geometric discrepancy: 0.0947

The information below is about HL_7RQB_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J4B|1|2A|C|2551
5J4B|1|2A|2MU|2552
5J4B|1|2A|G|2553
5J4B|1|2A|U|2554
5J4B|1|2A|U|2555
5J4B|1|2A|C|2556
5J4B|1|2A|G|2557

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2w

Transfer RNA; tRNA