HL_5J4B_197
3D structure
- PDB id
- 5J4B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CGGUGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J4B_197 not in the Motif Atlas
- Homologous match to HL_4LFB_015
- Geometric discrepancy: 0.0879
- The information below is about HL_4LFB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
5J4B|1|2a|C|689
5J4B|1|2a|G|690
5J4B|1|2a|G|691
5J4B|1|2a|U|692
5J4B|1|2a|G|693
5J4B|1|2a|A|694
5J4B|1|2a|A|695
5J4B|1|2a|A|696
5J4B|1|2a|U|697
5J4B|1|2a|G|698
Current chains
- Chain 2a
- 16S ribosomal RNA
Nearby chains
- Chain 2A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2g
- 30S ribosomal protein S7
- Chain 2k
- 30S ribosomal protein S11
- Chain 2v
- mRNA
- Chain 2y
- Transfer RNA; tRNA
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