HL_5J4B_230
3D structure
- PDB id
- 5J4B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- G(PSU)AAC(5MU)A(PSU)AA(4OC)
- Length
- 11 nucleotides
- Bulged bases
- 5J4B|1|2A|A|1913
- QA status
- Modified nucleotides: PSU, 5MU, 4OC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J4B_230 not in the Motif Atlas
- Homologous match to HL_5J7L_181
- Geometric discrepancy: 0.4169
- The information below is about HL_5J7L_181
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_25847.2
- Basepair signature
- cWW-F-cSH-tHW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5J4B|1|2A|G|1910
5J4B|1|2A|PSU|1911
5J4B|1|2A|A|1912
5J4B|1|2A|A|1913
5J4B|1|2A|C|1914
5J4B|1|2A|5MU|1915
5J4B|1|2A|A|1916
5J4B|1|2A|PSU|1917
5J4B|1|2A|A|1918
5J4B|1|2A|A|1919
5J4B|1|2A|4OC|1920
Current chains
- Chain 2A
- 23S ribosomal RNA
Nearby chains
- Chain 2a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 2v
- mRNA
- Chain 2w
- Transfer RNA; tRNA
- Chain 2x
- Transfer RNA; tRNA
Coloring options: