HL_5J4B_231

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases

5J4B|1|2A|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4B_231 not in the Motif Atlas

Homologous match to HL_9DFE_059

Geometric discrepancy: 0.1323

The information below is about HL_9DFE_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

5J4B|1|2A|U|2528
5J4B|1|2A|G|2529
5J4B|1|2A|A|2530
5J4B|1|2A|A|2531
5J4B|1|2A|G|2532
5J4B|1|2A|A|2533
5J4B|1|2A|A|2534
5J4B|1|2A|G|2535

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6