HL_5J4D_005

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCUUUGC

Length

7 nucleotides

Bulged bases

5J4D|1|A|U|208, 5J4D|1|A|U|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4D_005 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.26

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

5J4D|1|A|G|200
5J4D|1|A|C|201
5J4D|1|A|U|208
5J4D|1|A|U|209
5J4D|1|A|U|210
5J4D|1|A|G|216
5J4D|1|A|C|217

Current chains

Chain A

16S ribosomal RNA

Nearby chains