HL_5J4D_021
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GAA(M2G)(5MC)AACGC
- Length
- 10 nucleotides
- Bulged bases
- 5J4D|1|A|A|968, 5J4D|1|A|G|971
- QA status
- Modified nucleotides: M2G, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J4D_021 not in the Motif Atlas
- Homologous match to HL_4LFB_021
- Geometric discrepancy: 0.1053
- The information below is about HL_4LFB_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97521.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5J4D|1|A|G|963
5J4D|1|A|A|964
5J4D|1|A|A|965
5J4D|1|A|M2G|966
5J4D|1|A|5MC|967
5J4D|1|A|A|968
5J4D|1|A|A|969
5J4D|1|A|C|970
5J4D|1|A|G|971
5J4D|1|A|C|972
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain IA
- Transfer RNA; tRNA
- Chain JA
- Peptide chain release factor 1
- Chain RA
- 30S ribosomal protein S9
- Chain SA
- 30S ribosomal protein S10
- Chain VA
- 30S ribosomal protein S13
- Chain WA
- 30S ribosomal protein S14 type Z
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