HL_5J4D_030
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GAUCAGCCAUGC
- Length
- 12 nucleotides
- Bulged bases
- 5J4D|1|A|U|1364
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J4D_030 not in the Motif Atlas
- Homologous match to HL_4LFB_030
- Geometric discrepancy: 0.0713
- The information below is about HL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86432.1
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5J4D|1|A|G|1356
5J4D|1|A|A|1357
5J4D|1|A|U|1358
5J4D|1|A|C|1359
5J4D|1|A|A|1360
5J4D|1|A|G|1361
5J4D|1|A|C|1362|||A
5J4D|1|A|C|1362|||B
5J4D|1|A|A|1363
5J4D|1|A|U|1364
5J4D|1|A|G|1365
5J4D|1|A|C|1366
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain DB
- 30S ribosomal protein Thx
- Chain LA
- 30S ribosomal protein S3
- Chain RA
- 30S ribosomal protein S9
- Chain SA
- 30S ribosomal protein S10
- Chain WA
- 30S ribosomal protein S14 type Z
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