HL_5J4D_035

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGAAC

Length

6 nucleotides

Bulged bases

5J4D|1|B|G|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4D_035 not in the Motif Atlas

Homologous match to HL_9DFE_003

Geometric discrepancy: 0.0825

The information below is about HL_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82710.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

5J4D|1|B|G|123
5J4D|1|B|G|124
5J4D|1|B|G|125
5J4D|1|B|A|126
5J4D|1|B|A|127
5J4D|1|B|C|128

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain EA

50S ribosomal protein L34

Chain U

50S ribosomal protein L23