HL_5J4D_054
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUGAGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J4D_054 not in the Motif Atlas
- Homologous match to HL_9DFE_020
- Geometric discrepancy: 0.1005
- The information below is about HL_9DFE_020
- Detailed Annotation
- GNRA wlth tandem sheared
- Broad Annotation
- No text annotation
- Motif group
- HL_98423.3
- Basepair signature
- cWW-tSH-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
5J4D|1|B|G|712
5J4D|1|B|G|713
5J4D|1|B|U|714
5J4D|1|B|G|715
5J4D|1|B|A|716
5J4D|1|B|G|717
5J4D|1|B|A|718
5J4D|1|B|C|719
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain E
- 50S ribosomal protein L2
- Chain XA
- 30S ribosomal protein S15
- Chain ZA
- 30S ribosomal protein S17
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