HL_5J4D_068

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAUGGACG

Length

8 nucleotides

Bulged bases

5J4D|1|B|U|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4D_068 not in the Motif Atlas

Homologous match to HL_9DFE_035

Geometric discrepancy: 0.1231

The information below is about HL_9DFE_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_00557.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5J4D|1|B|C|1451
5J4D|1|B|A|1453
5J4D|1|B|U|1454
5J4D|1|B|G|1455
5J4D|1|B|G|1456
5J4D|1|B|A|1457
5J4D|1|B|C|1458
5J4D|1|B|G|1459

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L17