HL_5J4D_085
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUG(OMG)GGCGG
- Length
- 9 nucleotides
- Bulged bases
- 5J4D|1|B|G|2250
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J4D_085 not in the Motif Atlas
- Homologous match to HL_9DFE_051
- Geometric discrepancy: 0.1251
- The information below is about HL_9DFE_051
- Detailed Annotation
- LSU P loop
- Broad Annotation
- LSU P loop
- Motif group
- HL_11974.3
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 19
Unit IDs
5J4D|1|B|C|2248
5J4D|1|B|U|2249
5J4D|1|B|G|2250
5J4D|1|B|OMG|2251
5J4D|1|B|G|2252
5J4D|1|B|G|2253
5J4D|1|B|C|2254
5J4D|1|B|G|2255
5J4D|1|B|G|2256
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain IA
- Transfer RNA; tRNA
- Chain JA
- Peptide chain release factor 1
- Chain N
- 50S ribosomal protein L16
- Chain X
- 50S ribosomal protein L27
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