HL_5J4D_089

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCUGCAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4D_089 not in the Motif Atlas

Homologous match to HL_9DFE_055

Geometric discrepancy: 0.0813

The information below is about HL_9DFE_055

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5J4D|1|B|C|2355
5J4D|1|B|C|2356
5J4D|1|B|U|2357
5J4D|1|B|G|2358
5J4D|1|B|C|2359
5J4D|1|B|A|2360
5J4D|1|B|A|2361
5J4D|1|B|G|2362

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain FA

50S ribosomal protein L35

Chain M

50S ribosomal protein L15

Chain X

50S ribosomal protein L27