HL_5J4D_090

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4D_090 not in the Motif Atlas

Homologous match to HL_5J7L_191

Geometric discrepancy: 0.1079

The information below is about HL_5J7L_191

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5J4D|1|B|C|2374
5J4D|1|B|G|2375
5J4D|1|B|A|2376
5J4D|1|B|A|2377
5J4D|1|B|A|2378
5J4D|1|B|G|2379

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain C

5S ribosomal RNA; 5S rRNA

Chain DA

50S ribosomal protein L33

Chain P

50S ribosomal protein L18