HL_5J4D_112

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

5J4D|1|FB|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4D_112 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.1467

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_87268.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5J4D|1|FB|G|259
5J4D|1|FB|G|260
5J4D|1|FB|U|261
5J4D|1|FB|A|262
5J4D|1|FB|A|263
5J4D|1|FB|U|264
5J4D|1|FB|G|265
5J4D|1|FB|G|266
5J4D|1|FB|C|267

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain ED

30S ribosomal protein S17

Chain HD

30S ribosomal protein S20