HL_5J4D_117

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

5J4D|1|FB|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4D_117 not in the Motif Atlas

Homologous match to HL_4LFB_011

Geometric discrepancy: 0.1537

The information below is about HL_4LFB_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.4

Basepair signature

cWW-tSW-F

Number of instances in this motif group

63

Unit IDs

5J4D|1|FB|C|419
5J4D|1|FB|U|420
5J4D|1|FB|U|421
5J4D|1|FB|C|422
5J4D|1|FB|G|423
5J4D|1|FB|G|424

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain QC

30S ribosomal protein S3

Chain RC

30S ribosomal protein S4