HL_5J4D_119

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCAGCC(7MG)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4D_119 not in the Motif Atlas

Geometric match to HL_6CZR_215

Geometric discrepancy: 0.3611

The information below is about HL_6CZR_215

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

GNRA with extra near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

5J4D|1|FB|G|521
5J4D|1|FB|C|522
5J4D|1|FB|A|523
5J4D|1|FB|G|524
5J4D|1|FB|C|525
5J4D|1|FB|C|526
5J4D|1|FB|7MG|527
5J4D|1|FB|C|528

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain MC

mRNA

Chain ZC

30S ribosomal protein S12