HL_5J4D_121
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGGUGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J4D_121 not in the Motif Atlas
- Homologous match to HL_4LFB_015
- Geometric discrepancy: 0.0886
- The information below is about HL_4LFB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
5J4D|1|FB|C|689
5J4D|1|FB|G|690
5J4D|1|FB|G|691
5J4D|1|FB|U|692
5J4D|1|FB|G|693
5J4D|1|FB|A|694
5J4D|1|FB|A|695
5J4D|1|FB|A|696
5J4D|1|FB|U|697
5J4D|1|FB|G|698
Current chains
- Chain FB
- 16S ribosomal RNA
Nearby chains
- Chain GB
- Large subunit ribosomal RNA; LSU rRNA
- Chain IB
- Transfer RNA; tRNA
- Chain MC
- mRNA
- Chain UC
- 30S ribosomal protein S7
- Chain YC
- 30S ribosomal protein S11
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