HL_5J4D_126

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4D_126 not in the Motif Atlas

Homologous match to HL_5J7L_020

Geometric discrepancy: 0.077

The information below is about HL_5J7L_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5J4D|1|FB|C|897
5J4D|1|FB|G|898
5J4D|1|FB|C|899
5J4D|1|FB|A|900
5J4D|1|FB|A|901
5J4D|1|FB|G|902

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain ED

30S ribosomal protein S17

Chain GB

Large subunit ribosomal RNA; LSU rRNA