HL_5J4D_127
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GAA(M2G)(5MC)AACGC
- Length
- 10 nucleotides
- Bulged bases
- 5J4D|1|FB|A|968, 5J4D|1|FB|G|971
- QA status
- Modified nucleotides: M2G, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J4D_127 not in the Motif Atlas
- Homologous match to HL_4LFB_021
- Geometric discrepancy: 0.1048
- The information below is about HL_4LFB_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97521.2
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
5J4D|1|FB|G|963
5J4D|1|FB|A|964
5J4D|1|FB|A|965
5J4D|1|FB|M2G|966
5J4D|1|FB|5MC|967
5J4D|1|FB|A|968
5J4D|1|FB|A|969
5J4D|1|FB|C|970
5J4D|1|FB|G|971
5J4D|1|FB|C|972
Current chains
- Chain FB
- 16S ribosomal RNA
Nearby chains
- Chain AD
- 30S ribosomal protein S13
- Chain BD
- 30S ribosomal protein S14 type Z
- Chain NC
- Transfer RNA; tRNA
- Chain OC
- Peptide chain release factor 1
- Chain WC
- 30S ribosomal protein S9
- Chain XC
- 30S ribosomal protein S10
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