HL_5J4D_134

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGGCAACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4D_134 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.2828

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5J4D|1|FB|C|1264
5J4D|1|FB|G|1265
5J4D|1|FB|G|1266
5J4D|1|FB|C|1267
5J4D|1|FB|A|1268
5J4D|1|FB|A|1269
5J4D|1|FB|C|1270
5J4D|1|FB|G|1271

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S13

Chain GD

30S ribosomal protein S19

Chain ID

30S ribosomal protein Thx