HL_5J4D_149

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAGAG

Length

5 nucleotides

Bulged bases

5J4D|1|GB|G|321, 5J4D|1|GB|A|322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4D_149 not in the Motif Atlas

Geometric match to HL_8VTW_010

Geometric discrepancy: 0.0379

The information below is about HL_8VTW_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5J4D|1|GB|C|319
5J4D|1|GB|A|320
5J4D|1|GB|G|321
5J4D|1|GB|A|322
5J4D|1|GB|G|323

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L24

Chain LB

50S ribosomal protein L4