HL_5J4D_183

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

5J4D|1|GB|A|1780, 5J4D|1|GB|C|1781, 5J4D|1|GB|C|1782, 5J4D|1|GB|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J4D_183 not in the Motif Atlas

Homologous match to HL_5J7L_178

Geometric discrepancy: 0.0741

The information below is about HL_5J7L_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

5J4D|1|GB|U|1777
5J4D|1|GB|U|1778
5J4D|1|GB|U|1779
5J4D|1|GB|A|1780
5J4D|1|GB|C|1781
5J4D|1|GB|C|1782
5J4D|1|GB|A|1783
5J4D|1|GB|A|1784
5J4D|1|GB|A|1785
5J4D|1|GB|A|1786
5J4D|1|GB|A|1787

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain JB

50S ribosomal protein L2

Chain JC

50S ribosomal protein L34

Chain YB

50S ribosomal protein L22