HL_5J4D_217
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- G(5MC)UCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- 5J4D|1|NC|U|33
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J4D_217 not in the Motif Atlas
- Homologous match to HL_6CFJ_107
- Geometric discrepancy: 0.0975
- The information below is about HL_6CFJ_107
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
5J4D|1|NC|G|31
5J4D|1|NC|5MC|32
5J4D|1|NC|U|33
5J4D|1|NC|C|34
5J4D|1|NC|A|35
5J4D|1|NC|U|36
5J4D|1|NC|A|37
5J4D|1|NC|A|38
5J4D|1|NC|C|39
Current chains
- Chain NC
- tRNA
Nearby chains
- Chain FB
- Small subunit ribosomal RNA; SSU rRNA
- Chain IB
- Transfer RNA; tRNA
- Chain MC
- mRNA
- Chain OC
- Peptide chain release factor 1
- Chain WC
- 30S ribosomal protein S9
Coloring options: