HL_5J4D_218
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- G(5MU)(PSU)CAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J4D_218 not in the Motif Atlas
- Homologous match to HL_4V9Q_215
- Geometric discrepancy: 0.0781
- The information below is about HL_4V9Q_215
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
5J4D|1|NC|G|53
5J4D|1|NC|5MU|54
5J4D|1|NC|PSU|55
5J4D|1|NC|C|56
5J4D|1|NC|A|57
5J4D|1|NC|A|58
5J4D|1|NC|A|59
5J4D|1|NC|U|60
5J4D|1|NC|C|61
Current chains
- Chain NC
- tRNA
Nearby chains
- Chain GB
- Large subunit ribosomal RNA; LSU rRNA
- Chain MB
- 50S ribosomal protein L5
- Chain SB
- 50S ribosomal protein L16
Coloring options: