HL_5J4D_224
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UUCCCAUUCCGAACA
- Length
- 15 nucleotides
- Bulged bases
- 5J4D|1|C|U|41
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5J4D_224 not in the Motif Atlas
- Homologous match to HL_9DFE_067
- Geometric discrepancy: 0.0936
- The information below is about HL_9DFE_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.3
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
5J4D|1|C|U|34
5J4D|1|C|U|35
5J4D|1|C|C|36
5J4D|1|C|C|37
5J4D|1|C|C|38
5J4D|1|C|A|39
5J4D|1|C|U|40
5J4D|1|C|U|41
5J4D|1|C|C|42
5J4D|1|C|C|43
5J4D|1|C|G|44
5J4D|1|C|A|45
5J4D|1|C|A|46
5J4D|1|C|C|47
5J4D|1|C|A|48
Current chains
- Chain C
- 5S ribosomal RNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain BA
- 50S ribosomal protein L31
- Chain H
- 50S ribosomal protein L5
- Chain P
- 50S ribosomal protein L18
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