HL_5J5B_008

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J5B_008 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.031

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5J5B|1|AA|A|320
5J5B|1|AA|A|321
5J5B|1|AA|C|322
5J5B|1|AA|U|323
5J5B|1|AA|G|324
5J5B|1|AA|A|325
5J5B|1|AA|G|326
5J5B|1|AA|A|327
5J5B|1|AA|C|328
5J5B|1|AA|A|329
5J5B|1|AA|C|330
5J5B|1|AA|G|331
5J5B|1|AA|G|332
5J5B|1|AA|U|333

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AP

30S ribosomal protein S16

Chain AT

30S ribosomal protein S20