HL_5J5B_041

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J5B_041 not in the Motif Atlas

Homologous match to HL_5J7L_010

Geometric discrepancy: 0.0287

The information below is about HL_5J7L_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5J5B|1|BA|C|379
5J5B|1|BA|G|380
5J5B|1|BA|C|381
5J5B|1|BA|A|382
5J5B|1|BA|A|383
5J5B|1|BA|G|384

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BP

30S ribosomal protein S16