HL_5J5B_073

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

5J5B|1|CA|G|329, 5J5B|1|CA|A|330, 5J5B|1|CA|C|331

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J5B_073 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.0862

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

5J5B|1|CA|G|327
5J5B|1|CA|U|328
5J5B|1|CA|G|329
5J5B|1|CA|A|330
5J5B|1|CA|C|331
5J5B|1|CA|A|332
5J5B|1|CA|G|333
5J5B|1|CA|C|334
5J5B|1|CA|C|335

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CE

50S ribosomal protein L4

Chain CV

50S ribosomal protein L24