HL_5J5B_078

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

5J5B|1|CA|U|546

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J5B_078 not in the Motif Atlas

Homologous match to HL_5J7L_149

Geometric discrepancy: 0.0656

The information below is about HL_5J7L_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_09452.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

5J5B|1|CA|G|543
5J5B|1|CA|C|544
5J5B|1|CA|U|545
5J5B|1|CA|U|546
5J5B|1|CA|A|547
5J5B|1|CA|G|548
5J5B|1|CA|G|549
5J5B|1|CA|C|550

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CK

50S ribosomal protein L13

Chain CS

50S ribosomal protein L21