HL_5J5B_098

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

5J5B|1|CA|A|1453, 5J5B|1|CA|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J5B_098 not in the Motif Atlas

Homologous match to HL_5J7L_169

Geometric discrepancy: 0.1543

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5J5B|1|CA|C|1451
5J5B|1|CA|G|1452
5J5B|1|CA|A|1453
5J5B|1|CA|C|1454
5J5B|1|CA|G|1455
5J5B|1|CA|G|1456
5J5B|1|CA|U|1457
5J5B|1|CA|U|1458
5J5B|1|CA|G|1459

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CO

50S ribosomal protein L17