HL_5J5B_178

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

5J5B|1|DA|A|1780, 5J5B|1|DA|U|1781, 5J5B|1|DA|U|1782, 5J5B|1|DA|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5J5B_178 not in the Motif Atlas

Homologous match to HL_5J7L_178

Geometric discrepancy: 0.0473

The information below is about HL_5J7L_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

5J5B|1|DA|U|1777
5J5B|1|DA|U|1778
5J5B|1|DA|U|1779
5J5B|1|DA|A|1780
5J5B|1|DA|U|1781
5J5B|1|DA|U|1782
5J5B|1|DA|A|1783
5J5B|1|DA|A|1784
5J5B|1|DA|A|1785
5J5B|1|DA|A|1786
5J5B|1|DA|A|1787

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D3

50S ribosomal protein L34

Chain DC

50S ribosomal protein L2